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Bell, J.J, Collina, M., Pierotti, M. (2025a) Benthic community analysis to support the development of the Coastal and Marine Ecological Classification Standard (CMECS) for Deep Reefs (40-115 m) in Rakiura (Stewart Island), the Otago Peninsula, Bay of Islands and Doubtless Bay. Prepared for the Department of Conservation under contract NOF-BIO582. 174 pp.

Bell, J.J, Collina, M., Pierotti, M. (2025b) Biotope delineation using the Coastal and Marine Ecological Classification Standard (CMECS) for deep reefs (50-115 m) in the Rakiura (Stewart Island), the Otago Peninsula, Bay of Islands and Doubtless Bay. Prepared for the Department of Conservation under contract NOF-BIO582. 36 pp.

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Cook, K., Leuinssen, E., Brough, T. (2024) Trait-based climate change vulnerability assessment of Aotearoa New Zealand's marine taxa. NIWA CLIENT REPORT No: 2024164HN. Prepared for Department of Conservation. 113 pp.

Department of Conservation, Ministry for the Environment, Ministry for Primary Industries (2019) New Zealand Marine Protected Areas: gaps analysis. Wellington: Department of Conservation. 75 pp.

Department of Conservation, Ministry for the Environment, Ministry for Primary Industries (2019) New Zealand Marine Protected Areas: Principles for network design. 54 pp.

Douglas, E., Lundquist, C. (2025) Aotearoa New Zealand Marine Activity-Pressure Matrix: Development report for the first five activity groups. NIWA CLIENT REPORT No: 2025124HN. Prepared for Department of Conservation. 45 pp.

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Lundquist, C., Stephenson, F., McCartain, L., Watson, S., Brough, T., Nelson, W., Neill, K., Anderson, T., Anderson, O., Bulmer, R., Gee, E., Pinkerton, M., Rowden, A., Thompson, D. (2020) Evaluating Key Ecological Areas datasets for the New Zealand Marine Environment. NIWA CLIENT REPORT No: 2020109HN. Prepared for the Department of Conservation. 131 pp.

Lundquist, C., Brough, T., McCartin, L., Stephenson, F., Watson, S. (2021) Guidance for the use of decision-support tools for identifying optimal areas for biodiversity conservation. NIWA CLIENT REPORT No: 2020347HN. Prepared for the Department of Conservation. 124 pp.

Morrison, M., Seaward, K., Mills, S., Hart, A., Bowden, D., Carter, M., Chin, C., Spong, K., Richer de Forges, M. (2023) Deep rocky and biogenic reef habitats of East Northland. NIWA CLIENT REPORT No: 2023291AK. Prepared for the Department of Conservation. 150 pp.

Morrison, M.A., Woolley, J.-M., Mills, S., Yeoman, J., Bian, R., Kelly, M., Richer de Forges, M., Jones, E. (2023) Review of deep rocky and biogenic reefs (50–300 metres water depth) knowledge in New Zealand: Biodiversity description, location, and threats. NIWA CLIENT REPORT No: 2023290AK. Prepared for the Department of Conservation. 200 pp.

Morrison, M., Carson-Groom, E., Leunissen, E. (2025) Marlborough Sounds offshore deep reef enhanced voyage report for four reef survey. NIWA CLIENT REPORT No: 2025181AK. Prepared for Department of Conservation. 35 pp.

Peterson, G., Stephenson, S., Brough T., Rowden, A. (2021) Supplementary information on Individual Seafloor Community Classification group descriptions. NIWA CLIENT REPORT No: 2020230HN. Prepared for the Department of Conservation. 240 pp.

Robertson, J., Pardo, E., Geange, S., Pallentin, A., Weston, S. (2022) Using Benthic Terrain Modeller to characterise Aotearoa New Zealand seafloor geomorphology. DOC Research and Development Series 367. 25 pp.

Rovellini, A., Shaffer, M. (2020) A review of the objectives of NZ marine reserves. Prepared for the Department of Conservation. 44 pp.

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Shaffer, M., Rovellini, A. (2020) A review of habitat use, home range, and connectivity for NZ species. Prepared for the Department of Conservation. 134 pp.

Stephenson, S., Rowden, A., Anderson, T., Hewitt, J., Costello, M., Pinkerton, M., Morrison, M., Clark, M., Wadhwa, S., Mouton, T., Lundquist, C. (2018) Mapping key ecological areas in the New Zealand marine environment: data collation. NIWA CLIENT REPORT No: 2018332HN. Prepared for the Department of Conservation. 155 pp.

Stephenson, F., Rowden, A.A., Brough, T., Petersen, G., Bulmer, R.H., Leathwick, J.R., Lohrer, A.M., Ellis, J.I., Bowden, D.A., Geange, S.W., Funnell, G.A., Freeman, D.J., Tunley, K., Tellier, P., Clark, D.E., Lundquist, C.J., Greenfield, B.L., Tuck, I.D., Mouton, T.L., Neill, K.F., Mackay, K.A., Pinkerton, M.H., Anderson, O.F., Gorman, R.M., Mills, S., Watson, S., Nelson, W.A., Hewitt, J.E. (2022) Development of a seafloor community classification for the New Zealand region using a Gradient Forest approach. Frontiers in Marine Science 8: 792712. https://doi.org/10.3389/fmars.2021.792712

Stephenson, F., Rowden, A., Brough, T., Leathwick, J., Bulmer, R., Clark, D., Lundquist, C., Greenfield, B., Bowden, D., Tuck, I., Neill, K., Mackay, K., Pinkerton, M., Anderson, O., Gorman, R., Mills, S., Watson, S., Nelson, W., Hewitt, J. (2021) Development of a New Zealand Seafloor Community Classification. NIWA CLIENT REPORT No: 2020243WN. Prepared for the Department of Conservation. 87 pp.

Stephenson, F., Rowden, A., Brough, T., Leathwick, J., Bulmer, R., Clark, D., Lundquist, C., Greenfield, B., Bowden, D., Tuck, I., Neill, K., Mackay, K., Pinkerton, M., Anderson, O., Gorman, R., Mills, S., Watson, S., Nelson, W., Hewitt, J. (2022) Development of a Seafloor Community Classification for the New Zealand Region using a Gradient Forest approach. NIWA CLIENT REPORT No: 2020243WN. Prepared for Department of Conservation. 87 pp.

Stephenson, F. (2023) Developing a maintenance framework for the NZSCC. Prepared for the Department of Conservation by Ocean Analytics. 30 pp.

Stephenson, F., Brough, T., Lohrer, D., Leduc, D., Geange, S., Anderson, O., Bowden, D., Clark, M.R., Davey, N., Pardo, E. and Gordon, D.P., (2023). An atlas of seabed biodiversity for Aotearoa New Zealand. Earth System Science Data Discussions, 2023, pp.1-13. https://doi.org/10.5194/essd-15-3931-2023

Stephenson, F., Rowden, A.A., Tablada, J., Tunley, K., Brough, T., Lundquist, C.J., Bowden, D.A. and Geange, S., (2023). A seafloor bioregionalisation for New Zealand. Ocean & Coastal Management, 242, p.106688. https://doi.org/10.1016/j.ocecoaman.2023.106688

Stephenson, F., Tablada, J., Rowden, A.A., Bulmer, R., Bowden, D.A. and Geange, S.W., (2024). Independent statistical validation of the New Zealand Seafloor Community Classification. Aquatic Conservation: Marine and Freshwater Ecosystems, 34(3), p.e4114. https://doi.org/10.1002/aqc.4114

Stewart-Sinclair, P., Lundquist, C. (2022) Application of the Key Biological Area (KBA) process to identify Key Ecological Areas. NIWA CLIENT REPORT No: 2022132HN. Prepared for Department of Conservation. 38 pp.

Tablada, J., Geange S., Hiddink, J.G., and Stephenson, F. (2026). Achieving Full Representativity of Seafloor Biodiversity With Minimal Expansion: Exploring a Strategy for New Zealand Marine Conservation. Diversity and Distributions 32, no. 2: e70142. https://doi.org/10.1111/ddi.70142

Tablada, J., Geange, S.W., Stephenson, F., (2025). Evaluating Representativity of Marine Spatial Management Areas Using the New Zealand Seafloor Community Classification. Aquatic Conservation: Marine and Freshwater Ecosystems 35, no. 11: e70247. https://doi.org/10.1002/aqc.70247